How to resolve the algorithm FASTA format step by step in the AutoHotkey programming language
Published on 12 May 2024 09:40 PM
How to resolve the algorithm FASTA format step by step in the AutoHotkey programming language
Table of Contents
Problem Statement
In bioinformatics, long character strings are often encoded in a format called FASTA.
A FASTA file can contain several strings, each identified by a name marked by a > (greater than) character at the beginning of the line.
Write a program that reads a FASTA file such as: Note that a high-quality implementation will not hold the entire file in memory at once; real FASTA files can be multiple gigabytes in size.
Let's start with the solution:
Step by Step solution about How to resolve the algorithm FASTA format step by step in the AutoHotkey programming language
Source code in the autohotkey programming language
Data =
(
>Rosetta_Example_1
THERECANBENOSPACE
>Rosetta_Example_2
THERECANBESEVERAL
LINESBUTTHEYALLMUST
BECONCATENATED
)
Data := RegExReplace(RegExReplace(Data, ">\V+\K\v+", ": "), "\v+(?!>)")
Gui, add, Edit, w700, % Data
Gui, show
return
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